Structural Similarities for the Entities in PDB 6AVO

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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Entity #1 | Chains A,F

Description: Proteasome subunit beta type-9 protein | Length: 199

No structure alignment results are available for 6AVO.A, 6AVO.F explicitly.

These chains are represented by chain 5LE5.N which has more than 50% sequence identity.

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Entity #10 | Chains P,b

Description: Proteasome subunit alpha type-2 protein | Length: 234

No structure alignment results are available for 6AVO.P, 6AVO.b explicitly.

These chains are represented by chain 5LE5.A which is 100% sequence identical.

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Entity #11 | Chains S,X

Description: Proteasome subunit beta type-1 protein | Length: 213

No structure alignment results are available for 6AVO.S, 6AVO.X explicitly.

These chains are represented by chain 5LE5.L which is 100% sequence identical.

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Entity #12 | Chains T,V

Description: Proteasome subunit beta type-2 protein | Length: 201

No structure alignment results are available for 6AVO.T, 6AVO.V explicitly.

These chains are represented by chain 5LE5.J which is 100% sequence identical.

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Entity #13 | Chains U,Y

Description: Proteasome subunit beta type-3 protein | Length: 205

No structure alignment results are available for 6AVO.U, 6AVO.Y explicitly.

These chains are represented by chain 5LE5.I which is 100% sequence identical.

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Entity #14 | Chains W,a

Description: Proteasome subunit beta type-4 protein | Length: 219

No structure alignment results are available for 6AVO.W, 6AVO.a explicitly.

These chains are represented by chain 5LE5.M which is 100% sequence identical.

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Entity #2 | Chains B,E

Description: Proteasome subunit beta type-10 protein | Length: 234

No structure alignment results are available for 6AVO.B, 6AVO.E explicitly.

These chains are represented by chain 5LE5.H which has more than 50% sequence identity.

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Entity #3 | Chains C,D

Description: Proteasome subunit beta type-8 protein | Length: 204

No structure alignment results are available for 6AVO.C, 6AVO.D explicitly.

These chains are represented by chain 5LE5.K which has more than 70% sequence identity.

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Entity #4 | Chains G,L

Description: Proteasome subunit alpha type-1 protein | Length: 263

No structure alignment results are available for 6AVO.G, 6AVO.L explicitly.

These chains are represented by chain 5LE5.E which is 100% sequence identical.

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Entity #5 | Chains H,M

Description: Proteasome subunit alpha type-5 protein | Length: 241

No structure alignment results are available for 6AVO.H, 6AVO.M explicitly.

These chains are represented by chain 5LE5.A which has more than 40% sequence identity.

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Entity #6 | Chains I,N

Description: Proteasome subunit alpha type-7 protein | Length: 248

No structure alignment results are available for 6AVO.I, 6AVO.N explicitly.

These chains are represented by chain 5LE5.A which has more than 40% sequence identity.

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Entity #7 | Chains J,Q

Description: Proteasome subunit alpha type-3 protein | Length: 255

No structure alignment results are available for 6AVO.J, 6AVO.Q explicitly.

These chains are represented by chain 5LE5.F which is 100% sequence identical.

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Entity #8 | Chains K,R

Description: Proteasome subunit alpha type-6 protein | Length: 246

No structure alignment results are available for 6AVO.K, 6AVO.R explicitly.

These chains are represented by chain 5LE5.G which is 100% sequence identical.

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Entity #9 | Chains O,Z

Description: Proteasome subunit alpha type-4 protein | Length: 261

No structure alignment results are available for 6AVO.O, 6AVO.Z explicitly.

These chains are represented by chain 5LE5.A which has more than 40% sequence identity.

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References