Sequence Similarity Clusters for the Entities in PDB 6AVO

Entity #1 | Chains: A,F
Proteasome subunit beta type-9 protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 41924
95 % 1 1 31836
90 % 3 3 12396
70 % 3 3 11673
50 % 258 271 52
40 % 258 271 66
30 % 536 559 13
Entity #10 | Chains: P,b
Proteasome subunit alpha type-2 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 25 815
95 % 18 29 862
90 % 18 29 895
70 % 18 29 928
50 % 258 282 45
40 % 1041 1148 3
30 % 1813 1996 3
Entity #11 | Chains: S,X
Proteasome subunit beta type-1 protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 15 1304
95 % 18 19 1188
90 % 18 19 1215
70 % 18 19 1250
50 % 18 19 1307
40 % 258 281 59
30 % 258 282 76
Entity #12 | Chains: T,V
Proteasome subunit beta type-2 protein, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 24 856
95 % 18 29 865
90 % 18 29 898
70 % 18 29 931
50 % 18 29 971
40 % 257 281 60
30 % 257 281 78
Entity #13 | Chains: U,Y
Proteasome subunit beta type-3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 24 855
95 % 18 29 864
90 % 18 29 897
70 % 18 29 930
50 % 258 281 49
40 % 258 282 57
30 % 258 282 77
Entity #14 | Chains: W,a
Proteasome subunit beta type-4 protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 14 1420
95 % 18 19 1185
90 % 18 19 1213
70 % 18 19 1248
50 % 18 19 1305
40 % 258 271 65
30 % 258 271 81
Entity #2 | Chains: B,E
Proteasome subunit beta type-10 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39535
95 % 1 1 30415
90 % 1 1 29335
70 % 3 3 11481
50 % 258 282 43
40 % 258 282 55
30 % 258 282 75
Entity #3 | Chains: C,D
Proteasome subunit beta type-8 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 41733
95 % 1 1 31704
90 % 3 3 12364
70 % 252 254 27
50 % 252 255 68
40 % 252 255 89
30 % 537 559 13
Entity #4 | Chains: G,L
Proteasome subunit alpha type-1 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 24 848
95 % 18 30 857
90 % 18 30 890
70 % 18 30 920
50 % 258 282 46
40 % 258 282 58
30 % 1814 1996 3
Entity #5 | Chains: H,M
Proteasome subunit alpha type-5 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 28 663
95 % 18 29 861
90 % 18 29 894
70 % 18 29 926
50 % 259 283 42
40 % 1042 1148 3
30 % 1815 1996 3
Entity #6 | Chains: I,N
Proteasome subunit alpha type-7 protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 24 851
95 % 18 30 859
90 % 18 30 892
70 % 18 30 923
50 % 258 282 47
40 % 1043 1148 3
30 % 1816 1996 3
Entity #7 | Chains: J,Q
Proteasome subunit alpha type-3 protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 26 593
95 % 19 30 644
90 % 19 30 671
70 % 19 30 712
50 % 55 66 342
40 % 55 66 357
30 % 1817 1996 3
Entity #8 | Chains: K,R
Proteasome subunit alpha type-6 protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 25 811
95 % 18 29 860
90 % 18 29 893
70 % 18 29 924
50 % 258 281 48
40 % 258 282 56
30 % 1818 1996 3
Entity #9 | Chains: O,Z
Proteasome subunit alpha type-4 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 25 809
95 % 18 29 858
90 % 18 29 891
70 % 18 29 921
50 % 258 282 44
40 % 1044 1148 3
30 % 1819 1996 3

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures