X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 8
Temperature 293.0
Details 1.8 M ammonium sulfate, 0.1 M Bis-Tris pH 6.5, 2% v/v PEG 550 MME, 100 nM NDSB-256

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 95.63 α = 90
b = 95.63 β = 90
c = 103.95 γ = 120
Symmetry
Space Group P 32 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 S 6M -- 2015-07-10
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SSRL BEAMLINE BL12-2 1.0 SSRL BL12-2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2 82.82 99.7 -- -- -- 5.5 -- 37475 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
-- -- -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.0 29.97 -- 1.34 -- 37356 3724 99.4 -- 0.214 0.21 0.247 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.0 2.0254 -- 127 1251 0.3222 0.372 -- 99.0
X Ray Diffraction 2.0254 2.052 -- 152 1174 0.3268 0.3644 -- 99.0
X Ray Diffraction 2.052 2.0801 -- 160 1243 0.3257 0.3478 -- 99.0
X Ray Diffraction 2.0801 2.1098 -- 143 1208 0.3106 0.2901 -- 99.0
X Ray Diffraction 2.1098 2.1413 -- 121 1243 0.2934 0.2935 -- 100.0
X Ray Diffraction 2.1413 2.1748 -- 125 1271 0.2779 0.358 -- 100.0
X Ray Diffraction 2.1748 2.2104 -- 118 1216 0.2735 0.326 -- 99.0
X Ray Diffraction 2.2104 2.2485 -- 123 1254 0.2645 0.3123 -- 100.0
X Ray Diffraction 2.2485 2.2894 -- 110 1262 0.2608 0.2635 -- 99.0
X Ray Diffraction 2.2894 2.3334 -- 126 1257 0.2531 0.2993 -- 99.0
X Ray Diffraction 2.3334 2.381 -- 129 1219 0.2506 0.3229 -- 99.0
X Ray Diffraction 2.381 2.4327 -- 149 1229 0.2445 0.2973 -- 99.0
X Ray Diffraction 2.4327 2.4893 -- 148 1196 0.2473 0.2788 -- 99.0
X Ray Diffraction 2.4893 2.5515 -- 139 1236 0.2405 0.2522 -- 99.0
X Ray Diffraction 2.5515 2.6205 -- 139 1241 0.2436 0.2953 -- 100.0
X Ray Diffraction 2.6205 2.6975 -- 141 1244 0.2426 0.2602 -- 100.0
X Ray Diffraction 2.6975 2.7846 -- 138 1242 0.2309 0.2904 -- 100.0
X Ray Diffraction 2.7846 2.884 -- 144 1262 0.2367 0.2535 -- 100.0
X Ray Diffraction 2.884 2.9994 -- 141 1247 0.234 0.2715 -- 100.0
X Ray Diffraction 2.9994 3.1357 -- 151 1230 0.2173 0.2648 -- 99.0
X Ray Diffraction 3.1357 3.3009 -- 150 1241 0.2165 0.2571 -- 99.0
X Ray Diffraction 3.3009 3.5074 -- 147 1244 0.1976 0.2249 -- 100.0
X Ray Diffraction 3.5074 3.7777 -- 130 1258 0.1773 0.2149 -- 100.0
X Ray Diffraction 3.7777 4.157 -- 120 1317 0.1644 0.2195 -- 100.0
X Ray Diffraction 4.157 4.7564 -- 139 1245 0.1418 0.1795 -- 98.0
X Ray Diffraction 4.7564 5.9848 -- 165 1264 0.1662 0.2055 -- 100.0
X Ray Diffraction 5.9848 29.9763 -- 149 1338 0.1945 0.2141 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.057
f_plane_restr 0.006
f_dihedral_angle_d 15.148
f_angle_d 0.948
f_bond_d 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3309
Nucleic Acid Atoms 0
Heterogen Atoms 4
Solvent Atoms 242

Software

Software
Software Name Purpose
PHENIX refinement version: (1.11_2567: ???)
iMOSFLM data processing version: 7.2.1
Aimless data reduction version: 7.0.038
Aimless data scaling version: 7.0.038