Citations in PubMed

Primary Citation PubMed: 11483494 Citations in PubMed

PDB ID Mentions in PubMed Central Article count: 6

Citations in PubMed

This linkout lists citations, indexed by PubMed, to the Primary Citation for this PDB ID.

PDB ID Mentions in PubMed Central

Data mentions are occurrences of PDB IDs in the full text articles from the PubMedCentral Open Access Subset of currently about 1 million articles. For each article, the sentences containing the PDB ID are listed. Article titles can be filtered by keywords and sorted by year.

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Cystathionine beta-synthase mutations: effect of mutation topology on folding and activity.

(2010) Hum Mutat 31

PubMed: 20506325 | PubMedCentral: PMC2966864 | DOI: 10.1002/humu.21273

X-ray structure of the active core of the CBS protein (PDB code 1JBQ) [ Meier et al., 2001 ] was utilized as the starting model for the catalytic domain.

1JBQ X-ray structure contains the first 413 residues of the protein and covers the whole catalytic domain.

Publication Year: 2010

Structure of catalytically competent intein caught in a redox trap with functional and evolutionary implications.

(2011) Nat Struct Mol Biol 18

PubMed: 21460844 | PubMedCentral: PMC3087850 | DOI: 10.1038/nsmb.2041

Comparison of the structure of the disulfide loop in the CPGC DnaE intein (red) with the two other observations of this loop in the Protein Data Bank (1JBQ, green; 1M6Y, cyan).

Publication Year: 2011

Cross-talk between the catalytic core and the regulatory domain in cystathionine ?-synthase: study by differential covalent labeling and computational modeling.

(2010) Biochemistry 49

PubMed: 21062078 | PubMedCentral: PMC3146298 | DOI: 10.1021/bi101384m

Model of wtCBS dimer was obtained by docking of a single C-terminal regulatory domain to 45CBS dimer (PDB ID 1JBQ , with missing loops reconstructed by Modeller package) using the program ZDOCK ( 37 )...

Publication Year: 2010

Mutation of L-2,3-diaminopropionic acid synthase genes blocks staphyloferrin B synthesis in Staphylococcus aureus.

(2011) BMC Microbiol 11

PubMed: 21906287 | PubMedCentral: PMC3179956 | DOI: 10.1186/1471-2180-11-199

Table 2 List of SbnA homologs Organism Similar Protein a PDB ID Identity (%) Similarity E-Value Arabidopsis thaliana Cysteine synthase 1z7w 33 0.500 0 Homo sapiens Cystathionine beta-synthase 1jbq 30 ... .498 0 Schizosaccharomyces pombe Serine racemase 1v71 17 0.202 0 Escherichia coli Biosynthetic threonine deaminase 1tdj 18 0.255 0 Homo sapiens L-serine dehydratase 1p5j 20 0.249 0 Mycobacterium tuberculosis Threonine synthase 2d1f 19 0.279 0 Pyrococcus furiosus Tryptophan synthase beta chain 1 1v8z 22 0.231 0 Pyrococcus horikoshii 1-aminocyclopropane-1-carboxylate deaminase 1j0a 19 0.123 0 a Only top hit, using HHPred, for each class of enzyme is shown Table 3 List of SbnB homologs Organism Homologous Protein a PDB ID Identity (%) Similarity E-Value Archaeoglobus fulgidus Alanine dehydrogenase 1omo 32 0.543 0 Homo sapiens MU-crystallin homolog 2i99 24 0.381 0 Pseudomonas putida Ornithine cyclodeaminase 1x7d 21 0.352 0 Thermoplasma volcanium Glutamyl-tRNA reductase 3oj0 15 0.312 3e-19 Geobacillus kaustophilus Shikimate 5-dehydrogenase 2egg 13 0.113 1.4e-9 a Only top hit, using HHPred, for each class of enzyme is shown Table 4 List of bacteria, not including S. aureus , containing transcriptionally-linked sbnA / sbnB homologs Organism Homologous Gene ID (SbnA/SbnB) Similarity (% SbnA/%SbnB) E-Value (SbnA/SbnB) Predicted gene cluster product Staphylococcus pseudintermedius HK10-03 spint_0334/spint_0335 90/91 2e-149/6e-161 Staphyloferrin B Cupriavidus metallidurans CH34 rmet_1117/rmet_1116 75/71 1e-102/2e-97 Staphyloferrin B Ralstonia solanacearum GMT1000 cysK2/rsp0418 76/79 8e-100/2e-118 Staphyloferrin B Shewanella denitrificans OS217 sden_0590/sden_0589 73/75 6e-100/2e-109 Staphyloferrin B Methylobacterium nodulans ORS 2060 mnod_6948/mnod_6949 71/72 9e-91/2e-104 Staphyloferrin B Acinetobacter sp.

Publication Year: 2011

Novel structural arrangement of nematode cystathionine ?-synthases: characterization of Caenorhabditis elegans CBS-1.

(2012) Biochem J 443

PubMed: 22240119 | PubMedCentral: PMC3316156 | DOI: 10.1042/BJ20111478

Protein domain modelling was performed by Swiss-model (automatic modelling mode) using the crystal structure of human 45CBS (PDB code 1JBQ, chain A) as a template [ 15 ].

Publication Year: 2012

Inter-domain communication of human cystathionine ?-synthase: structural basis of S-adenosyl-L-methionine activation.

(2014) J Biol Chem 289

PubMed: 25336647 | PubMedCentral: PMC4276868 | DOI: 10.1074/jbc.M114.610782

C , structural overlay of hCBS-FL Δ516–525 in the AdoMet-free state (PDB 4COO ; purple , regulatory domain; blue , catalytic domain) with the activated catalytic domain alone (PDB 1JBQ... , green ).

The hCBS-FL Δ516–525 structure was solved by molecular replacement using the hCBS catalytic domain structure (Protein Data Bank (PDB) 1JBQ ) as a search model in PHASER ( 21 ).

Publication Year: 2014