Primary Citation PubMed: 11483494
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Cystathionine beta-synthase mutations: effect of mutation topology on folding and activity.
(2010) Hum Mutat 31
PubMed: 20506325 | PubMedCentral: PMC2966864 | DOI: 10.1002/humu.21273
X-ray structure of the active core of the CBS protein (PDB code 1JBQ) [ Meier et al., 2001 ] was utilized as the starting model for the catalytic domain.
1JBQ X-ray structure contains the first 413 residues of the protein and covers the whole catalytic domain.
Publication Year: 2010
Structure of catalytically competent intein caught in a redox trap with functional and evolutionary implications.
(2011) Nat Struct Mol Biol 18
PubMed: 21460844 | PubMedCentral: PMC3087850 | DOI: 10.1038/nsmb.2041
Comparison of the structure of the disulfide loop in the CPGC DnaE intein (red) with the two other observations of this loop in the Protein Data Bank (1JBQ, green; 1M6Y, cyan).
Publication Year: 2011
Cross-talk between the catalytic core and the regulatory domain in cystathionine ?-synthase: study by differential covalent labeling and computational modeling.
(2010) Biochemistry 49
PubMed: 21062078 | PubMedCentral: PMC3146298 | DOI: 10.1021/bi101384m
Model of wtCBS dimer was obtained by docking of a single C-terminal regulatory domain to 45CBS dimer (PDB ID 1JBQ , with missing loops reconstructed by Modeller package) using the program ZDOCK ( 37 )...
Mutation of L-2,3-diaminopropionic acid synthase genes blocks staphyloferrin B synthesis in Staphylococcus aureus.
(2011) BMC Microbiol 11
PubMed: 21906287 | PubMedCentral: PMC3179956 | DOI: 10.1186/1471-2180-11-199
Table 2 List of SbnA homologs Organism Similar Protein a PDB ID Identity (%) Similarity E-Value Arabidopsis thaliana Cysteine synthase 1z7w 33 0.500 0 Homo sapiens Cystathionine beta-synthase 1jbq 30 ... .498 0 Schizosaccharomyces pombe Serine racemase 1v71 17 0.202 0 Escherichia coli Biosynthetic threonine deaminase 1tdj 18 0.255 0 Homo sapiens L-serine dehydratase 1p5j 20 0.249 0 Mycobacterium tuberculosis Threonine synthase 2d1f 19 0.279 0 Pyrococcus furiosus Tryptophan synthase beta chain 1 1v8z 22 0.231 0 Pyrococcus horikoshii 1-aminocyclopropane-1-carboxylate deaminase 1j0a 19 0.123 0 a Only top hit, using HHPred, for each class of enzyme is shown Table 3 List of SbnB homologs Organism Homologous Protein a PDB ID Identity (%) Similarity E-Value Archaeoglobus fulgidus Alanine dehydrogenase 1omo 32 0.543 0 Homo sapiens MU-crystallin homolog 2i99 24 0.381 0 Pseudomonas putida Ornithine cyclodeaminase 1x7d 21 0.352 0 Thermoplasma volcanium Glutamyl-tRNA reductase 3oj0 15 0.312 3e-19 Geobacillus kaustophilus Shikimate 5-dehydrogenase 2egg 13 0.113 1.4e-9 a Only top hit, using HHPred, for each class of enzyme is shown Table 4 List of bacteria, not including S. aureus , containing transcriptionally-linked sbnA / sbnB homologs Organism Homologous Gene ID (SbnA/SbnB) Similarity (% SbnA/%SbnB) E-Value (SbnA/SbnB) Predicted gene cluster product Staphylococcus pseudintermedius HK10-03 spint_0334/spint_0335 90/91 2e-149/6e-161 Staphyloferrin B Cupriavidus metallidurans CH34 rmet_1117/rmet_1116 75/71 1e-102/2e-97 Staphyloferrin B Ralstonia solanacearum GMT1000 cysK2/rsp0418 76/79 8e-100/2e-118 Staphyloferrin B Shewanella denitrificans OS217 sden_0590/sden_0589 73/75 6e-100/2e-109 Staphyloferrin B Methylobacterium nodulans ORS 2060 mnod_6948/mnod_6949 71/72 9e-91/2e-104 Staphyloferrin B Acinetobacter sp.
Novel structural arrangement of nematode cystathionine ?-synthases: characterization of Caenorhabditis elegans CBS-1.
(2012) Biochem J 443
PubMed: 22240119 | PubMedCentral: PMC3316156 | DOI: 10.1042/BJ20111478
Protein domain modelling was performed by Swiss-model (automatic modelling mode) using the crystal structure of human 45CBS (PDB code 1JBQ, chain A) as a template [ 15 ].
Publication Year: 2012
Inter-domain communication of human cystathionine ?-synthase: structural basis of S-adenosyl-L-methionine activation.
(2014) J Biol Chem 289
PubMed: 25336647 | PubMedCentral: PMC4276868 | DOI: 10.1074/jbc.M114.610782
C , structural overlay of hCBS-FL Δ516–525 in the AdoMet-free state (PDB 4COO ; purple , regulatory domain; blue , catalytic domain) with the activated catalytic domain alone (PDB 1JBQ... , green ).
The hCBS-FL Δ516–525 structure was solved by molecular replacement using the hCBS catalytic domain structure (Protein Data Bank (PDB) 1JBQ ) as a search model in PHASER ( 21 ).
Publication Year: 2014
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