3DM9

Structures and Conformations in Solution of the Signal Recognition Particle Receptor from the archaeon Pyrococcus furiosus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.203

Literature

Macromolecules
Sequence Display for 3DM9

Classification: TRANSPORT PROTEIN

Total Structure Weight: 37172.82

Macromolecule Entities
Molecule Chains Length Organism Details
Signal recognition particle receptor B 328 Pyrococcus furiosus Gene Name(s): ftsY PF1766
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

B (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.203
  • Space Group: P 6 2 2

Unit Cell:

Length (Å) Angle (°)
a = 144.60 α = 90.00
b = 144.60 β = 90.00
c = 70.41 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-06-30
  • Released Date: 2008-11-11
  • Deposition author(s): Egea, P.F., Tsuruta, H., Napetschnig, J., Walter, P., Stroud, R.M.

Revision History

  • 2011-07-13
    Type: Version format compliance