2J5B

Structure of the Tyrosyl tRNA synthetase from Acanthamoeba polyphaga Mimivirus complexed with tyrosynol


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.216

Literature

Macromolecules
Sequence Display for 2J5B

Classification: LIGASE

Total Structure Weight: 80126.45

Macromolecule Entities
Molecule Chains Length Organism Details
TYROSYL-TRNA SYNTHETASE A, B 348 Acanthamoeba polyphaga mimivirus EC#: 6.1.1.1 IUBMB
Fragment: RESIDUES 2-346
Mutation: I58M
Gene Name(s): YARS Gene View MIMI_L124
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TYE
Query on TYE

A, B 4-[(2S)-2-amino-3-hydroxypropyl]phenol
tyrosinol (Synonym)
C9 H13 N O2
DBLDQZASZZMNSL-QMMMGPOBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.216
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 63.50 α = 90.00
b = 107.30 β = 90.00
c = 148.89 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-09-13
  • Released Date: 2007-09-25
  • Deposition author(s): Abergel, C., Rudinger-thirion, J., Giege, R., Claverie, J.M.

Revision History

  • 2011-06-30
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance