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5'(dCCPUPCPCPUPUP)3':3'(rAGGAGGAAA)5', where P=propynyl
 
 
DOI:10.2210/pdb1nts/pdb   NDB ID: 1NTS
1NTS
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Related Citations in PDB Entry (REMARK 1) Hide
     
     
  •  
    Move Section Molecular Description Hide
    Classification: RNA/DNA
    Structure Weight: 5242.64
     
    Molecule:5'-R(*AP*AP*AP*GP*GP*AP*GP*GP*A)-3'
    Polymer:1Type:polyribonucleotideLength:9
    Chains:A
    Molecule:5'-D(*(5PC)P*(5PC)P*(PDU)P*(5PC)P*(5PC)P*(PDU)P*(PDU))-3'
    Polymer:2Type:polydeoxyribonucleotideLength:7
    Chains:B
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
    Polymer: 2
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Related PDB Entries Hide
    Id Details
    1NTQ  DNA:RNA hybrid with same sequence 
    1NTT  DNA:RNA hybrid with propynylated bases 2-7 in DNA strand 
     
     
  •  
    Move Section Modified Residues Hide
    Identifier Name Formula Interaction View Links
    5PC     5(1-PROPYNYL)-2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE (parent: DC)(type: dnaLinking) C12 H16 N3 O7 P Link out to Ligand Expos:5PC Link out to SuperLigands:5PC Link out to SuperHapten:5PC
    PDU     5(1-PROPYNYL)-2'-DEOXYURIDINE-5-MONOPHOSPHATE (parent: DU)(type: dnaLinking) C12 H19 N2 O8 P Link out to Ligand Expos:PDU Link out to SuperLigands:PDU Link out to SuperHapten:PDU
     
     
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  •  
    Move Section Deposition Summary Hide
    Authors:   Znosko, B.M.,   Barnes III, T.W.,   Krugh, T.R.,   Turner, D.H.

    Deposition:   2003-01-30
    Release:   2003-06-10
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   SOLUTION NMR
    Experimental Data:   Download NMR Restraints  [ NMR Restraint Grid External Link to BMRB ]
    NMR Ensemble
    Conformers Calculated:     n/a
    Conformers Submitted:     1
    Selection Criteria: n/a
    NMR Refine
    Method: SOLUTION NMR