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Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in EDTA solution
 
 
DOI:10.2210/pdb1vbx/pdb   NDB ID: PR0114
1VBX
 
Primary Citation
spinning wheel
 
 
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    Classification: Translation/rna
    Structure Weight: 35966.30
     
    Molecule:Hepatitis Delta virus ribozyme
    Polymer:1Type:polyribonucleotideLength:76
    Chains:B
    Mutation:C75U
    Molecule:U1 small nuclear ribonucleoprotein A
    Polymer:2Type:polypeptide(L)Length:100
    Chains:A
    Fragment:U1A_RBD(residues 1-100)
    Mutation:Y31H/Q36R
     
     
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    Polymer: 1
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
    Polymer: 2
    Scientific Name: Homo sapiens Go to NCBI Taxonomy entry Common Name: Human Expression System: Escherichia coli  
     
     
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    Id Details
    1CX0  cleaved HDV ribozyme 
    1DRZ  cleaved HDV ribozyme 
    1SJF  the same protein/RNA(C75U) complex in Cobalt Hexammine solution 
    1VBY  the same protein/RNA(C75U) complex and Mn2+ bound 
    1VBZ  the same protein/RNA(C75U) complex in Ba2+ solution 
    1VC0  the same protein/RNA(C75U) complex in Imidazole and Sr2+ solutions 
    1VC5  the same protein/RNA(wild type) complex in EDTA solution 
    1VC6  the same protein/RNA(C75U) complex in Imidazole and Mg2+ solutions 
    1VC7  the same protein/RNA(C75U) complex in Sr2+ solution 
     
     
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    Authors:   Ke, A.,   Zhou, K.,   Ding, F.,   Cate, J.H.D.,   Doudna, J.A.

    Deposition:   2004-03-03
    Release:   2004-05-18
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
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    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors  [ EDS External Link to EDS ]
    View a histogram of Resolution Resolution[Å]: 2.70
    R-Value: 0.252 (obs.)
    R-Free: 0.285
    Space Group: H 3 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 108.58 α = 90.00 
    b = 108.58 β = 90.00 
    c = 190.00 γ = 120.00